Relevant Scientific work from our scientists:
Published Articles:
- Using Bioconductor package BiGGR for metabolic flux estimation based on gene expression changes in brain: Anand K. Gavai , Farahaniza Supandi, Hannes Hett Ling, Paul Murrell, Jack Kelley AM & Johannes HGM van Beek (PLoS One, 2014)
- Simulating the physiology of athletes consistently endurance sports events: modeling human energy conversion and metabolism: a case study on "Tour de France" champion Lance Armstrong John HGM van Beek, Farahaniza Supandi, Anand K. Gavai , Thomas W. Binsl & Hannes Hett Ling. (Journal of phil transactions (Royal Society) - 2011)
- MADMAX 2 - Management and analysis database for multiple omics experiments Lin K, H Kools, the Great PJ Gavai AK , RK Basnet, Cheng F, Wu J, Wang X, Rigby A, Hooiveld GJ Bonnema G, Fisher RG, Muller MR , Kelley YES. (Journal of Integrative Bioinformatics, 2011)
- Dessertation: Bayesian Networks for omics data analysis Wageningen University, Anand K. Gavai (2009)
- Constraint-based probabilistic learning or metabolic pathways from tomato volatiles Anand K. Gavai , Yury Tikunov Remco Ursem, Arnaud Bovy, Fred Eeuwijk, Harm Nijveen, Jack Kelley AM & Peter JF Lucas (Metabolomics 2009)
- MADMAX - Database Management and Analysis for Multi-platform microarray experiments Anand K. Gavai , Philip de Groot, Ke Lin, Guido Hooiveld, Mark V. Boekschoten, Liu Yannan, Harm Nijveen Pieter Neerincx, Michael Mueller & Jack Kelley AM (ISMB / ECCB Conference - Vienne (Austria)) Available on: http: //madmax.bioinformatics.nl (2007)
Conference Proceedings:
• Jan Barfoot, Emma Kemp, Kate Doherty, Clare Blackburn, Shintaro Senguko, Anand K. Gavai , Alexander Servellen and Anders Karlsson: Stem Cell Research: Research and Perspectives on the Evolving International Landscape (Cell Press 2014).
- Johannes van Beek, Farahaniza Supandi Thomas Binsl, Anand Gavai , Albert de Graaf and Hannes Hett Ling (2012): Modelling muscle energy transfer and whole body heat transport falling on a mountain time trial in the Tour de France . Basel (Switzerland), September 9-12, 2012. (Highlight Presentation).
- Gavai AK , de Groot P, Lin K, Liu Y, Hooiveld G Kelley JAM, Mu ller M (2007) MADMAX LIMS, Quality Control and Statistical Analysis: a showcase . NBIC BioRange Consortium Meeting. Ede (NL), March 5-6, 2008, abstract 36, p. 90.
- Gavai AK , de Groot P, Lin K, Liu Y, Nijveen H, Hooiveld G, Müller M, Kelley JAM (2007) MADMAX - . Management and Analysis Database for MicroArray Experiments ISMB / ECCB, Vienna (AT), July 21-25 , 2007, Abstract B31.
- the Great PJ Gavai A , Lin K, Liu Y, Hooiveld G Kelley JAM, Mu ller M (2006 ) NuGO human and mouse microarray support; The (statistical) analysis pipeline . Benelux bio- matics Conference 2006 (BBC 2006), Wageningen (NL), October 17-18, 2006, abstract 24, p. 46.
- Gavai AK , de Groot P, Lin K, Liu Y, Hooiveld G, Mu ller M Kelley JAM (2006) MAD MAX - Management and Analysis Database for MicroArray experiments . Benelux bio- matics Conference 2006 (BBC 2006), Wageningen (NL), October 17-18, 2006, abstract 25, p. 47.
Published Softwares:
- Metabolic Reconstructions (Interactive Model for Human Brain Energy Metabolism) (http://www.insilicosystems.nl).
- MADMAX: An Oracle based data mining software for microarray data (https://madmax.bioinformatics.nl) (2006-present)
- BiGGR – Metabolic Flux Estimation for simulating disease model. (http://www.bioconductor.org) (2009-present)
- Temporal graphical models for building networks for modeling time series -omics data (2006- present)
- Incorporating pathway knowledge from KEGG to reconstruct metabolomics network using constraint based approach (2007-present)
- Fishers Exact Test- Implemented in Visual Basic (2003) (http://www.gavai.nl)